Insertion junction: CLIP2.005538_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005538
Chromosome:chromosome 16
Location:1454362
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g652550 PRPL24 (1 of 1) PTHR12903:SF1 - 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC; Chloroplast ribosomal protein L24 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGTCCATTGCAAGGTCGGCTGCGCACCACGAGCGACGCCCAAGCCTCC
Internal bar code:TTGGGCAATAGGTGTTGTGAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1877
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGGGACCCTTGCATGAGG
Suggested primer 2:GCTTAAGCAGATGCACGAGC