Insertion junction: CLIP2.005539_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005539
Chromosome:chromosome 3
Location:4571352
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g176350 PLAP5,PLP5 (1 of 17) PF04755 - PAP_fibrillin (PAP_fibrillin); Plastid lipid associated protein 5 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTGGCTGACTGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
Internal bar code:AGGTAGATCACCGGAAGGCATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2133
LEAP-Seq percent confirming:80.4348
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:ACACACAAATGCACGTGTCG
Suggested primer 2:TGACGAGATGGTGGGGAGAT