Insertion junction: CLIP2.005549_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005549
Chromosome:chromosome 16
Location:257608
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g694400 TGD2,CGL57 Trigalactosyldiacylglycerol 2; (1 of 2) PF02470 - MlaD protein (MlaD) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGATGTAGACCAGGTCGTCCAGCGCCACACCCTGTGCGTGTGAGAGAG
Internal bar code:CGTTTAATGAGCCGAGCCAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:524
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CACGGCTGAACCACTTGTTG
Suggested primer 2:TGTTGAAGCCCGCCAAATTG