Insertion junction: CLIP2.005578_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005578
Chromosome:chromosome 12
Location:6015833
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g534450 CGL86 forkhead-associated domain-containing protein; (1 of 1) PTHR23308//PTHR23308:SF29 - NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 // SUBFAMILY NOT NAMED 3'UTR
Cre12.g534500 (1 of 1) PTHR20955//PTHR20955:SF1 - UNCHARACTERIZED // PROTEIN JAGUNAL HOMOLOG 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGTAGCAATAACTCACTCTCATGCCTGTGCGCCTGGACCTGTAGGCAA
Internal bar code:TACAAGACCAAATGGTCAGGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:5652
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:173
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:173

Suggested primers for confirmation by PCR

Suggested primer 1:GCTAGAGGGCTGTGTGTTGT
Suggested primer 2:TACGGCCTTACACACCACAC