Insertion junction: CLIP2.005591_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005591
Chromosome:chromosome 17
Location:662931
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g700300 CGL22 cdc48-like protein; (1 of 3) PF00004//PF07724 - ATPase family associated with various cellular activities (AAA) (AAA) // AAA domain (Cdc48 subfamily) (AAA_2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCCTCTACCTCCGCATCCTCCTGCACCTTACCTTGCCCGTAGCCGAGG
Internal bar code:GGGATACCCTGACACCAGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1106
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGTGTTGAGTGTGCCACA
Suggested primer 2:ATGGAATTGAAGAGGCCGCA