Insertion junction: CLIP2.005604_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005604
Chromosome:plastome
Location:59307
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802287 ChreCp023,atpE,2716972 ATP synthase epsilon chain; (1 of 1) K02114 - F-type H+-transporting ATPase subunit epsilon (ATPF1E, atpC) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAAGGACGCTCTGGTGTTAAAATAGAAATTTGTAAACTCATAATAAAAA
Internal bar code:CGCTAGTTCAGGAGTCGCCTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:135
LEAP-Seq percent confirming:15.3846
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCTTTAAGCGCGGTAACT
Suggested primer 2:ACAACAACAAGAGGACCAGCA