Insertion junction: CLIP2.005628_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005628
Chromosome:chromosome 5
Location:3577218
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g234050 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTATACCTTAGTGTGCGGAAGCTTGTTGTTATGGGAAGCGGGTGGCCCAC
Internal bar code:TCGGTTAAAGGGGCAAATCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1207
LEAP-Seq percent confirming:80.7692
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:AGAACTTTCTGGAGGGCGTG
Suggested primer 2:CACGAACCTGACGAACCTCA