Insertion junction: CLIP2.005646_4

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005646
Chromosome:chromosome 12
Location:2280920
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g508300 CGL144 Conserved in the Green Lineage; (1 of 3) PF04359 - Protein of unknown function (DUF493) (DUF493) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGTTGCATGGTGGTGACGTGACATGGCGGCGACACGTCACTGCCGGCC
Internal bar code:GACGAATACTCTATCATATGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:3442
LEAP-Seq percent confirming:94.0
LEAP-Seq n confirming:94
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:100

Suggested primers for confirmation by PCR

Suggested primer 1:GCATCGCGCTTCACAGTAAG
Suggested primer 2:GCCTGTGTATGAGGTGGTCC