Insertion junction: CLIP2.005686_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005686
Chromosome:chromosome 3
Location:9151059
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g200319 CDS
Cre03.g200431 (1 of 1) IPR001356//IPR009057//IPR023214 - Homeobox domain // Homeodomain-like // HAD-like domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCCGGTGTTATTAACCCAAGAATATACATGGTCACATATATAGTGGAAA
Internal bar code:TTAGAGATTGCATTGGAAAACT

Confirmation - LEAP-Seq

LEAP-Seq distance:1946
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:GTATCCTGCCGCTCCTTACC
Suggested primer 2:CTACAGTGGGCCCTTGGAAG