Insertion junction: CLIP2.005720_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.005720
Chromosome:chromosome 4
Location:2372393
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g221200 CGL109 Conserved in the Green Lineage; (1 of 1) IPR001005//IPR001965//IPR009057//IPR011011//IPR013083//IPR017877 - SANT/Myb domain // Zinc finger, PHD-type // Homeodomain-like // Zinc finger, FYVE/PHD-type // Zinc finger, RING/FYVE/PHD-type // Myb-like domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCCTGCAACACCCTCGGGGATGGGGCCTACTGTCGAGTGCCGCTACGC
Internal bar code:GGCCGAACTCGCGTATCCAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:536
LEAP-Seq percent confirming:55.5556
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTAGGCCATTGCTCGTAT
Suggested primer 2:CCGTCACTGGTTGTACTGCT