Insertion junction: CLIP2.005722_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.005722
Chromosome:chromosome 16
Location:3217033
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g665650 HFLX1,HFLX Putative chloroplast GTP-bidning protein involved in ribosome hibernation or ribosome biogenesis; (1 of 1) K03665 - GTP-binding protein HflX (hflX) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGAGGATGAGGACGACGGGGTGGTGCTGCTCGCGTGAGGGCTGTGGGGC
Internal bar code:GTGAGGCCTCTAACACCACTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2082
LEAP-Seq percent confirming:31.25
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCCAAGGGATTCGCAGCAAT
Suggested primer 2:GGTTTGCGCATCAAAACCCT