Insertion junction: CLIP2.005745_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005745
Chromosome:chromosome 10
Location:2150544
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433350 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCACAGCTGGCGGCACGGCATTGGGGTACCGACAGGGGGCCATGGGGG
Internal bar code:CCCACCGGTCCTCATAAGGCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:716
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGTTGTACACTGGCGTCT
Suggested primer 2:CAGGTGAGCTGCTGACTTCA