Insertion junction: CLIP2.005750_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005750
Chromosome:chromosome 4
Location:385712
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g217911 (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCCGAGGCTGCAAGCCATGGGAGCGGTCGGGGGGACACGTGGAGCTTAG
Internal bar code:AACTTATCTACTGTATTATTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1643
LEAP-Seq percent confirming:29.3333
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:53
LEAP-Seq n unique pos:75

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGCCAAACTGTTGAACCG
Suggested primer 2:TCGGGGATTCAATCGCAACA