Insertion junction: CLIP2.005752_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005752
Chromosome:chromosome 16
Location:5891376
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g679300 CGL139 Conserved in the Green Lineage 3'UTR
Cre16.g679350 (1 of 3) IPR003131//IPR011333 - Potassium channel tetramerisation-type BTB domain // POZ domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTAAGAATTGAAGCAGATATGCGGAGCCGCACGGTGACTCGTAACATG
Internal bar code:GTATGGACCAGACATATACGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1864
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGGCGCCATTCTAAAGGA
Suggested primer 2:CACCTACCGTATCACTGCCC