Insertion junction: CLIP2.005780_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005780
Chromosome:chromosome 12
Location:1559318
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g487500 CGL61,NYE1, SGR1 Chlorophyll a dechelatase; (1 of 1) PTHR31750//PTHR31750:SF4 - FAMILY NOT NAMED // PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTGCAATTGGACGGTGCAGGTTTGGCACTCGCGCGCAGTAGCGCGCCAT
Internal bar code:ACTCGTCGGCACTATAAAAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:4535
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:76
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:TTCACCGTACGTTCTCGCAA
Suggested primer 2:CTCTCTCGGTGGAGTTCAGC