Insertion junction: CLIP2.005786_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005786
Chromosome:chromosome 11
Location:4182999
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g481450 ATPG1,ATPG Chloroplast ATP synthase subunit II; (1 of 2) K02109 - F-type H+-transporting ATPase subunit b (ATPF0B, atpF) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGACTGACCCCCAGGTGCAAGGATAACCACGCGCAAGCGCGGAGCTTACA
Internal bar code:AGAGTATGCATGCCCGTGTTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1329
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TGAGCGCGATAACCTCATCC
Suggested primer 2:CTTTTCGCTGAAGGGTGTGC