Insertion junction: CLIP2.005815_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005815
Chromosome:chromosome 3
Location:6561297
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194450 CGL24 Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGCACAGATGGAGGTGGGGCAGGGGCTGTATGGGCCTTCCTAGTGACTG
Internal bar code:GGAGCGGGTGTTCGGCTGGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1224
LEAP-Seq percent confirming:95.6522
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ATGTAAAAGGGGAGCTGGCC
Suggested primer 2:TGCTCATTCAGTACCGCCAG