Insertion junction: CLIP2.005857_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005857
Chromosome:chromosome 4
Location:3930999
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre04.g231026 SRP43,cpSRP43 (1 of 1) K12271 - signal recognition particle 43 kDa protein (SRP43, CAO); 43 kDa subunit of chloroplast signal recognition particle intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCGCCCCCCTGCTGGCCGCCCCGGACTGGGAGCCGCGGGTTGTGCTGA
Internal bar code:TTGGGGGCGTGACCCGGAGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:549
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:ACTCTTCACCGCACTTCCTG
Suggested primer 2:CTCACTGTCAGGACCCCAAC