Insertion junction: CLIP2.005875_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.005875
Chromosome:chromosome 6
Location:5124972
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g283000 CGLD39 Conserved in the Green Lineage and Diatoms intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAAACCAGGGGCGCGATTGAACGTGCTGCCCTGTCACAAGCTGGACAC
Internal bar code:TTGTGCTTTGAACAATTGTGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:822
LEAP-Seq percent confirming:56.3636
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCCCTCCCAACTTCCATC
Suggested primer 2:CCCTTCTGCAAGCACCAAAC