Insertion junction: CLIP2.005887_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005887
Chromosome:chromosome 1
Location:2594218
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015350 POR1,POR Light-dependent protochlorophyllide reductase; (1 of 1) K00218 - protochlorophyllide reductase (E1.3.1.33, por) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGCTCGGAGGCTCGTGGGCGCGTGCTGGGGCTCGGGGACTCCTGCCTG
Internal bar code:ATCATACCTCAGACGAATAAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:977
LEAP-Seq percent confirming:45.4545
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTCAGTTCAGCCTCCCTT
Suggested primer 2:AGAAGCAGACCGCCATCATC