Insertion junction: CLIP2.005934_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.005934
Chromosome:chromosome 6
Location:3718823
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278159 CRCO,CO,CON1,CONSTANS CONSTANS-like protein involved in circadian rhythms; (1 of 1) PF00643//PF06203 - B-box zinc finger (zf-B_box) // CCT motif (CCT) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTGCGCGCCATACCCGCTTCGTGCCCTGCCAGGGCTGCAACAAGGCCGG
Internal bar code:TCCTTCACACCATACAGCCGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1052
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CATGCGTAAGGGAATGCAGC
Suggested primer 2:AGGTGACAGCAGTGTACGTG