Insertion junction: CLIP2.005939_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005939
Chromosome:chromosome 3
Location:740094
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145987 (1 of 7) IPR000104//IPR020683 - Antifreeze protein, type I // Ankyrin repeat-containing domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGCCGCGGCGGCCCCTGCGACAAGGGACGCCAGCACCCGCCGGTGCCC
Internal bar code:GGAGAACGCGTTGGGCGGAGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:213
LEAP-Seq percent confirming:7.14286
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CAATCGAGCTCTGGACGGAA
Suggested primer 2:AGATGATCGTGTTGGGGTCG