Insertion junction: CLIP2.005945_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005945
Chromosome:chromosome 10
Location:2148552
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433350 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCTGCTCCTAGCCCAGCGCGGGCCTGATGAGGTTGTTGCAGCAGGGCG
Internal bar code:ACCTGGTAACTGAGCTCCGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1745
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCGTCATCATGCATGCAT
Suggested primer 2:CAACTGCAGGCGGCTATCTA