Insertion junction: CLIP2.005974_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005974
Chromosome:chromosome 17
Location:66602
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g696300 (1 of 1) PTHR12360//PTHR12360:SF1 - NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 // NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCATCAAAGCGCGGTAATTGCGCAGACTTGAGAAGCCTGTTCACCGCGA
Internal bar code:AAGTGGTCGGTATGAAACAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:6925
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:AGTCGAGCTCAGTGTGTGTG
Suggested primer 2:ATCTTGTTTGGCGTTGCACC