Insertion junction: CLIP2.005974_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005974
Chromosome:chromosome 17
Location:66610
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g696300 (1 of 1) PTHR12360//PTHR12360:SF1 - NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 // NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGATGCCAATTATTGTTGCCGTCATCAAACATACATGCAAGGAGACTAG
Internal bar code:TGTGCTCCTATCGTGAGCTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:5333
LEAP-Seq percent confirming:88.4615
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:ATCTTGTTTGGCGTTGCACC
Suggested primer 2:AGTCGAGCTCAGTGTGTGTG