Insertion junction: CLIP2.006000_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.006000
Chromosome:chromosome 3
Location:6654183
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g195200 HLD1,CGL76 Conserved in the Green Lineage; (1 of 6) IPR000073//IPR000639//IPR029058 - Alpha/beta hydrolase fold-1 // Epoxide hydrolase-like // Alpha/Beta hydrolase fold 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGGCGTCCGGGCAGGGGCGTCGTCTGGGCAGCGGGGCCAGCGGGGGCT
Internal bar code:ATTGTCTGAAACGGGTTGTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1661
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CTTTTTCACTGCGGCGTTCA
Suggested primer 2:AGTCGGTGATGAAGTGGCTG