Insertion junction: CLIP2.006111_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.006111
Chromosome:chromosome 17
Location:4253455
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g729700 CGL133 (1 of 1) PTHR14374:SF0 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 11; Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACGCCACACCCGCACCTGGCAGCCGCTCCGTGCCGTCGCCCTCCGCC
Internal bar code:AAATGGCAAATAGCATCTCTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1916
LEAP-Seq percent confirming:82.1429
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTCCCGCAGTGTTTTGTG
Suggested primer 2:GAGTTTGTCCCCATCCCCTG