Insertion junction: CLIP2.006131_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.006131
Chromosome:chromosome 1
Location:6911953
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g049600 CGLD22 (1 of 1) K02116 - ATP synthase protein I (atpI); Assembly factor for chloroplast ATPase outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGACAAGCAGGGGCACAAACAGGGCGAGGCAAGGCAGAAGAGGGCGC
Internal bar code:CACTTCGTATACGATTGCAAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:389
LEAP-Seq percent confirming:30.4348
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGCATGTGTTGAATGTGG
Suggested primer 2:AACGCTCCTATCGGCTAAGC