Insertion junction: CLIP2.006210_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.006210
Chromosome:chromosome 13
Location:1562829
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g573000 E2FR1 (1 of 2) PTHR13271//PTHR13271:SF44 - UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE // RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE SMALL SUBUNIT N-METHYLTRANSFERASE I-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAAACCGCAATGCAGATGCCGTCTGGGCCGTCTGGCACCGACCGGAGA
Internal bar code:AGACAGGTCGTGTGGAGCAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:2614
LEAP-Seq percent confirming:51.4286
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CGCAAGCACCATTTCCAACA
Suggested primer 2:GTGTCGGTTTTGCCTGTGTC