Insertion junction: CLIP2.006236_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.006236
Chromosome:chromosome 5
Location:550412
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g244450 (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase 3'UTR
Cre05.g244500 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCACTGCGCATCCGCCGCATGTGCCGCGTCTGGCTGCGCTGCGGGGCCC
Internal bar code:ATAATACTAAGTTGCGCAGCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1396
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCGCAGACACAGAGACAC
Suggested primer 2:TTGTGTGCGATCCGTTACCA