Insertion junction: CLIP2.006319_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.006319
Chromosome:chromosome 12
Location:1776551
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre12.g485750 CGL128 (1 of 1) PTHR13420//PTHR13420:SF5 - UNCHARACTERIZED // UPF0235 PROTEIN; Conserved in the Green Lineage 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCACTCGACTGGTTCCACCACTCGCACCACAACCACCGCTCGCGACCACA
Internal bar code:CCTTAGACCTCGTTATATTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:629
LEAP-Seq percent confirming:28.2051
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:28
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTTCGGCTCCCATATCCC
Suggested primer 2:AAAGCAGTCGGATCGTGTGT