Insertion junction: CLIP2.006323_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.006323
Chromosome:chromosome 6
Location:6636455
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g294750 CHLG1,CHLG Chlorophyll synthetase; (1 of 1) 2.5.1.62 - Chlorophyll synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCATGGCGCTCCGCATCGAGCCCATACCCGGTGACTGGACTCCTTACAC
Internal bar code:GATCTCTTAAGAGAGGGACGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1002
LEAP-Seq percent confirming:38.4615
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGCTCCAATTAAGCCCCC
Suggested primer 2:GCCTGAAGTGAGAGCGAGTT