Insertion junction: CLIP2.006332_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.006332
Chromosome:chromosome 12
Location:4367055
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre12.g801409 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGATGGTGATGGGGACGGTCGGCGGTGCTGGCGCCCTGCCGGCCGGCAT
Internal bar code:TGCATCGGATAAGCTATGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:2983
LEAP-Seq percent confirming:13.3333
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:39
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGGGGTTGGCATCAAACT
Suggested primer 2:TCTTTTCTGCTCGCGTGTCT