Insertion junction: CLIP2.006348_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.006348
Chromosome:chromosome 16
Location:2997011
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g663800 TPT25,CGL51 Conserved in the Green Lineage; (1 of 1) PTHR11132:SF88 - XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCAAACGCCAGCAAGTGCCGCTTTGGCAAGCCCCGCTTGTTCCCTTTC
Internal bar code:ACAGAAGTTTAAGTATTTGAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1321
LEAP-Seq percent confirming:74.6269
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:67

Suggested primers for confirmation by PCR

Suggested primer 1:TGGCGTGTTCATCTTCTGCT
Suggested primer 2:CAACCCCACAAACAGCCATG