Insertion junction: CLIP2.006383_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.006383
Chromosome:chromosome 4
Location:1677899
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre04.g212500 CGL42 (1 of 6) PF09353 - Domain of unknown function (DUF1995) (DUF1995); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGCCTGTACAGCTATACGTCCACTCCCAAACTTGTCATTCTGCCAGGT
Internal bar code:CATAAATAACATACAGCTGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:700
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGGAGGTAGGGGTTACAT
Suggested primer 2:CCACACGACAGACTGACGAA