Insertion junction: CLIP2.006386_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.006386
Chromosome:chromosome 9
Location:2550813
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392700 CGL39 Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGCAGCATCATGGCAAAGGCAGAATTCGAAGCGTGAGGGGCCGAAGTC
Internal bar code:GGTTGTACCATTAGCATTTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2289
LEAP-Seq percent confirming:83.0769
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:GATGGTGGATGGGGCGATAG
Suggested primer 2:CGGATTGAATGGAGCGCTTG