Insertion junction: CLIP2.006424_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.006424
Chromosome:chromosome 12
Location:6015727
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g534450 CGL86 forkhead-associated domain-containing protein; (1 of 1) PTHR23308//PTHR23308:SF29 - NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 // SUBFAMILY NOT NAMED 3'UTR
Cre12.g534500 (1 of 1) PTHR20955//PTHR20955:SF1 - UNCHARACTERIZED // PROTEIN JAGUNAL HOMOLOG 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTTATCGCAATGCGTGCTGCTCAAGTGACAACCAACCTGCCACACACAC
Internal bar code:CCGTTTGTCTGGGGCCCAAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1799
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:85

Suggested primers for confirmation by PCR

Suggested primer 1:TACGGCCTTACACACCACAC
Suggested primer 2:GCTAGAGGGCTGTGTGTTGT