Insertion junction: CLIP2.006428_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.006428
Chromosome:plastome
Location:104063
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802310 2716997,rps3,ChreCp046 30S ribosomal protein S3; (1 of 1) PTHR11760//PTHR11760:SF19 - 30S/40S RIBOSOMAL PROTEIN S3 // 30S RIBOSOMAL PROTEIN S3, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAACTAAAACAAGTGCATCAGGCACTAGTGTTCTTAAAAAACGTACTTT
Internal bar code:CGTTGCGGCAGATTCGACCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:201
LEAP-Seq percent confirming:56.25
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGAACACGCAGACTACCT
Suggested primer 2:TTGCCGGGGATTTGTTAGCT