Insertion junction: CLIP2.006431_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006431
Chromosome:plastome
Location:68574
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802282 psaA_exon3,ChreCp019,2717000 photosystem I P700 apoprotein A1 transpliced exon 3 of 3; (1 of 1) K02689 - photosystem I P700 chlorophyll a apoprotein A1 (psaA) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAACGACCATGTAGTAGCAATACCACCTAAAAGGTAGTGAGCTACACCA
Internal bar code:GGCTCAGATTCCGTAAATTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:193
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TTTCCCTTGTGACGGTCCTG
Suggested primer 2:GCGTCTACCATTCCGCCATA