Insertion junction: CLIP2.006510_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006510
Chromosome:chromosome 3
Location:4414211
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g175200 TOC75 Translocon at the outer envelope membrane of chloroplasts, 75 kDa subunit; (1 of 2) PTHR12815//PTHR12815:SF7 - SORTING AND ASSEMBLY MACHINERY SAM50 PROTEIN // OUTER ENVELOPE PROTEIN 80, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAATGAAGGCGTAGGGGGAGGGGGAGAGGGAGAGGGGGAGGGAGGAAGTG
Internal bar code:TATATTGCCTTTTATGAGTGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:208
LEAP-Seq percent confirming:3.33333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:29
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CATGTTGCGCGATGAACGAT
Suggested primer 2:CATGGAGCCGTCATAGTCCC