Insertion junction: CLIP2.006564_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.006564
Chromosome:chromosome 7
Location:5406813
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g350500 TSV,TSV1 Valyl-tRNA synthetase; (1 of 1) PTHR11946//PTHR11946:SF76 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // ATP BINDING/VALINE-TRNA LIGASE/AMINOACYL-TRNA LIGASE 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTCTCTGATCTGGCGTGCGCTCGCAGGCAGAGTCTGCAACGACCATGC
Internal bar code:GGTGGGTACGCACCAACGATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3047
LEAP-Seq percent confirming:80.9524
LEAP-Seq n confirming:68
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:84

Suggested primers for confirmation by PCR

Suggested primer 1:GAAACCCTGACCCGCATGTA
Suggested primer 2:TCACACGATGACACGCTGAA