Insertion junction: CLIP2.006603_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006603
Chromosome:chromosome 5
Location:445491
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre05.g243800 CPLD45,PSB27 (1 of 1) K08902 - photosystem II Psb27 protein (psb27); conserved expressed protein involved in PSII biogenesis intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATGGCACCCGCCATCCCATCTCCATTCCACCCCCACCCCAACTCCTCC
Internal bar code:GGTATCGCGTGTGGTAGCGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:578
LEAP-Seq percent confirming:18.75
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:39
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGTTCAACCGCCAGTCAG
Suggested primer 2:CGCTCGGTTTGGAAAGCAAA