Insertion junction: CLIP2.006622_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.006622
Chromosome:chromosome 3
Location:6657788
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g195200 HLD1,CGL76 Conserved in the Green Lineage; (1 of 6) IPR000073//IPR000639//IPR029058 - Alpha/beta hydrolase fold-1 // Epoxide hydrolase-like // Alpha/Beta hydrolase fold intron
Cre03.g195250 (1 of 2) PF13679 - Methyltransferase domain (Methyltransf_32) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTTCACCGATCGGTTTGCGCGGTCCCTAGGAGCAGTATTCGGCGCTGAA
Internal bar code:CGTTTGCTTCAGCTTTCTGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1723
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGGTGAAGGAGGGTTCGG
Suggested primer 2:TGAGTACCGTCGGTGGTTTG