Insertion junction: CLIP2.006710_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.006710
Chromosome:chromosome 7
Location:4111560
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g342800 CGL16 (1 of 1) PF07063 - Domain of unknown function (DUF1338) (DUF1338); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCCACCAGCCATCCGTCAGCAGTTGCCTTTCCTCCGCCGCGTAATGAC
Internal bar code:TAGGCGCAGGTACATGGCCCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:930
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TTTTAACACGCTTGCCTGCC
Suggested primer 2:GGGGTTGTGGGGGTTATGAG