Insertion junction: CLIP2.006730_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.006730
Chromosome:chromosome 7
Location:4022932
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g340200 TEF3,PGRL1 Proton-gradient related-like; (1 of 1) PTHR31032//PTHR31032:SF1 - FAMILY NOT NAMED // PGR5-LIKE PROTEIN 1A, CHLOROPLASTIC-RELATED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTGGTGTGTGTGGGCCACGCGCGGGTCAGCGGGCAGTCTTGACCAATCC
Internal bar code:GCTAAAGTTCTAAGACACATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2265
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GGCATCGTAGTCCTCGTCAG
Suggested primer 2:TGTAGAATGTGCGTGCCCTT