Insertion junction: CLIP2.006797_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.006797
Chromosome:chromosome 17
Location:531929
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre17.g699450 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAGTGACGGTCGCTGCGCCGGAGGATTGCGGTGCATTAGCCATCCGCG
Internal bar code:GTCCCATTTAATGCCGTGGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1277
LEAP-Seq percent confirming:46.1538
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCCAAATCACACACCGG
Suggested primer 2:GGAGACAGAGGCGATGGATG