Insertion junction: CLIP2.006801_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.006801
Chromosome:chromosome 12
Location:1443681
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g488350 (1 of 2) K00464 - all-trans-8'-apo-beta-carotenal 15,15'-oxygenase (diox1) 3'UTR
Cre12.g488351 (1 of 1) IPR001368//IPR009030//IPR011641 - TNFR/NGFR cysteine-rich region // Insulin-like growth factor binding protein, N-terminal // Tyrosine-protein kinase ephrin type A/B receptor-like 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGGAAATACACATTCAACAATACTACAGTAACATACAACCACACGCGG
Internal bar code:CAATTTGGGAAGTAGGGGGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2879
LEAP-Seq percent confirming:81.4815
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGATGAGTGGTTCCTGGG
Suggested primer 2:TTGGGGCTGTGATAAGCAGG