Insertion junction: CLIP2.006812_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.006812
Chromosome:chromosome 10
Location:2985372
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g440450 PSB28 (1 of 1) K08903 - photosystem II 13kDa protein (psb28); Photosystem II associated subunit 28 CDS
Cre10.g440500 (1 of 5) PF12738 - twin BRCT domain (PTCB-BRCT) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCCGTTGGCACCGGTGCGCGAGCGGGTCAGGCGCACCTCGGGAACCGT
Internal bar code:GGAGGGGAAATCCTAGCAGTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:4032
LEAP-Seq percent confirming:80.303
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:66

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGTGACCGAGACCGTCTG
Suggested primer 2:GTCACACACACCAACGCTTC