Insertion junction: CLIP2.006814_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.006814
Chromosome:chromosome 3
Location:6064601
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g190150 CGL1 (1 of 2) PF11833 - Protein of unknown function (DUF3353) (DUF3353); Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGCCCATCTTCTTGTTTTCCCGTAGGCTGTACACGGCATAGCCCAGCG
Internal bar code:GGTAACCTGGGACAACTAGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1084
LEAP-Seq percent confirming:31.8182
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GAGATTGAGGCCGCATACGA
Suggested primer 2:CGGCAGATAAAACCCATGCG