Insertion junction: CLIP2.006832_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.006832
Chromosome:chromosome 8
Location:912330
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre08.g361850 (1 of 1) PF05981 - CreA protein (CreA) 5'UTR
lncRNA_TCONS_00153552 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGCACGCGTGCAGCCACTGAACGAAAGATGCAGCTTTCCAGGTGCCATC
Internal bar code:GAGATGACGGGAGGATGAGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:752
LEAP-Seq percent confirming:40.9091
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTGCAGTGCATGGAATCT
Suggested primer 2:CAGTTGCAACGAAGAACGCA